- EDUCATION AND TRAINING
- CURRENT RESEARCHES
- Plant cell wall biosynthesis and microbial degradation
- Metagenomics
- Origin and evolution of plant cell wall
- PREVIOUS RESEARCHES
- Comparative and evolutionary study of ORFans
- Evolutionary study of microbial and viral genome biology
- Comparative and evolutionary study of important protein families
- New genes identification and preliminary validation using in silico approaches
- Pseudogenes and gene duplications
- RESEARCH LINKS
- PAPERS
- Kataeva, IA, Yang, SJ, Dam, P., Poole, FL, Yin, Y., Zhou, F., Chou, W., Xu, Y., Goodwin, L., Sims, DR, Detter, JC, Hauser, LG, Westpheling, J., Adams, MWW. (2009) Genome Sequence of the Anaerobic, Thermophilic and Cellulolytic Bacterium. Journal of Bacteriology 191(11):3760-1. PubMed
- Huang, M., Sun, D., Lou Y., Yin, Y., et al. (2008) Analysis and Preparation of Oligonucletide Microarray of Apoptosis related Genes. Prog. Biochem. Biophys. 2008, 35(12): 1451~1460
- Yin, Y., Fischer, D. (2008) Identification and investigation of ORFans in the viral world. BMC Genomics 2008, 9:24. PubMed|BioMed (see how evolutionists and creationists argued on ORFans)
- Huang, M, Wang, Y., Sun, D., Zhu, H., Yin, Y., Zhang, W., Yang, S., Quan, L., Bai, J., Wang, S., Chen, Q., Li, S., Xu, N. (2006) Identification of genes regulated by Wnt/beta-catenin pathway and involved in apoptosis via microarray analysis. BMC Cancer 2006, 6:221. PubMed|BioMed
- Yin, Y., Fischer, D. (2006) On the origin of microbial ORFans: Quantifying the strength of the evidence for viral lateral transfer. BMC Evolutionary Biology 2006, 6:63. PubMed|BioMed
- Qian, Z., Yin, Y., Zhang, Y., Lu, L., Li, Y., Jiang, Y. (2006) Genomic characterization of ribitol teichoic acid synthesis in Staphylococcus aureus: genes, genomic organization and gene duplication. BMC Genomics 2006, 7:74. PubMed|BioMed
- Yin, Y., Zhang, Y., Yu, P., Luo, J., Li S., Jiang, Y. (2005) Comparative study of apoptosis related genes in human, mouse and rat genomes. Acta Biochimica et Biophysica Sinica. 37(5), 341-8. PubMed
- Chen, Y., Zhang, Y., Yin, Y., Gao, G., Li, S., Jiang, Y., Gu, X. and Luo, J. (2005) SPD--a web-based secreted protein database. Nucleic Acids Res, 33 Database Issue, D169-173. PubMed
- Wang, B., Xu, Z., Xu, C., Yin., Y., Ding, W., Yu, H. (2004) A Study of Gridifying Scientific Computing Legacy Codes. Lecture Notes in Computer Science, 3251, 404 - 412. (Grid and Cooperative Computing - GCC 2004: Third International Conference, Wuhan, China, October 21-24, 2004. Proceedings) SpringerLink
- Zhang, Y., Yin, Y., Chen, Y., Gao, G., Yu, P., Luo, J. and Jiang, Y. (2003) PCAS--a precomputed proteome annotation database resource. BMC Genomics, 4, 42. PubMed
- Yin, Y., Luo, J., Jiang, Y. (2003) Advances in G-protein-coupled receptors and related bioinformatics study. Chinese Science bulletin, 48(6), 511-516. SciChina
- Jiang, Y., Gao, G., Fang, G., Gustafson, E.L., Laverty, M., Yin, Y., Zhang, Y., Luo, J., Greene, J.R., Bayne, M.L., Hedrick, J.A. and Murgolo, N.J. (2003) PepPat, a pattern-based oligopeptide homology search method and the identification of a novel tachykinin-like peptide. Mamm Genome, 14, 341-349. PubMed
- CONFERENCE POSTERS AND TALKS
- Yin, Y., Chou, WC., Xu, Y. (2009) Phylogenetic sub-classification of CAZy families and application in identification of novel glycosyl hydrolases in the environmental metagenomes. BioEnergy Science Center 3rd retreat
- Yin, Y., Gu, X., Bar-Peled, M., Xu, Y. (2009) Phylogenetic study of NDP-sugar interconversion enzymes: evolutionary relatedness and origin. BioEnergy Science Center 3rd retreat
- Kong, Y., Zhou, G., Avci, U., Gu, X., Jones, C., Yin, Y., Xu, Y., Hahn, M. Two poplar glycosyltransferase genes, PdGATL1.1 and PdGATL1.2, are functional orthologs to PARVUS/AtGATL1 in Arabidopsis. BioEnergy Science Center 3rd retreat
- Gu, X., Wages, C., Yin, Y., Xu, Y., Amor, J., Bar-Peled. M. (2009) Characterization of UDP-Xylose Synthase Like (UXSL) Enzymes in Pathogenic Bacteria. BioEnergy Science Center 3rd retreat
- Biswal, A., Yin, Y., Xu, Y., Mohnen, D. (2009) Identifying recalcitrance genes target among PL1 and GT77 family. BioEnergy Science Center 3rd retreat
- Kulkarni, A., Urbanowicz, B., Pena, M., Yin, Y., Xu, Y., York, W. (2009) Phylogenetic study of Xylan biosynthesis genes. BioEnergy Science Center 3rd retreat
- Yang, S., Kataeva, I., Yin, Y., Dam, P., Xu, Y., Westpfeling, J., Adams, MWW. (2009) Reclassification of 'Anaerocellum thermophilum' DSM 6725 as Caldicellulosiruptor bescii comb. nov., and emended description of the genus Caldicellulosiruptor. BioEnergy Science Center 3rd retreat
- Yin, Y., Chen, H., Cantwell, B., Jouline, I., Hahn, M., Mohnen, D., Xu Y. (2009) The plant cell wall biosynthesis related Galacturonosyltransferase (GAUT) and GAUT like (GATL) genes have a different origin than the other Glycosyltransferase family 8 genes. Genomics:GTL Awardee Workshop VII.
- Yin, Y., Chen, H., Cantwell, B., Jouline, I., Hahn, M., Mohnen, D., Xu Y. (2008) Computational study of the plant GT8 genes: insight about their origin and function. BioEnergy Science Center 2nd retreat (Oral presentation).
- Yin, Y., Huang J., Xu Y. (2008) The cellulose synthase superfamily in fully sequenced plants and algae. CSB2008.
- Yin, Y., Fischer, D. (2007) Identification and investigation of ORFans in the viral world. SMBE 2007.
- Yin, Y., Fischer, D. (2006) On the origin of microbial ORFans: Quantifying the strength of the evidence for viral lateral transfer. ISMB 2006.
- Yin, Y., Chen, Y., Luo, J., Gu, X., Jiang, Y. (2002) Mining for novel G-protein coupled receptors based on similarity search. The 2nd Chinese conference on Bioinformatics, 38.
- Jiang, Y., Gao, G., Fang G., Yin, Y., Luo, J., Greene, J., Bayne, M., Murgolo, N. (2002) PepPat: a pattern based oligopeptide homology search algorithm. The 2nd Chinese conference on Bioinformatics, 37.
- Zhang, Y., Yin, Y., Yu, P., Luo, J., Gu, X., Jiang, Y. (2002) Classifying IPI based on protein folding features and conserved domains. The 2nd Chinese conference on Bioinformatics, 36.
- ACADEMIC SERVICE
- Reviewer for NSF (2007), PNAS, Genomics, APBC2009, Journal of Biomedicine and Biotechnology, CSB2009
- Program committee member of IBW2009, BIBM2009
- MISCELLANEOUS
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