Wen-Chi Chou

[Contact Information] | [Research Interests] | [Education] | [Professional Experience] | [Publications] |  [Courses] | [Links]

Contact Information:

Institute of Bioinformatics &
Computational Systems Biology laboratory (CSBL)
Department of Biochemistry and Molecular Biology
A134, Davison Life Sciences Building
The University of Georgia,
Athens, GA 30602

Phone: (706)542-3930
Fax: (706)542-9751
E-mail:

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Research Interests:

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Education:

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Professional Experience:

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Publications:

Papers: [pubmed]

  1. Fenglou Mao, Fengfeng Zhou, Yanbin Yin, Wen-Chi Chou, Chan Zhou, Huiling Chen, and Ying Xu, "pDAWG: an Integrated Database for Plant Cell-Wall Genes", BioEnergy Research [SpringerLink] [pDAWG Website]
  2. (2009) Irina A. Kataeva, Sung-Jae Yang, Phuongan Dam, Farris L Poole II, Yanbin Yin, Fengfeng Zhou, Wen-Chi Chou, Ying Xu, Lynne Goodwin, David R. Sims, John C. Detter, Loren J. Hauser, Janet Westpheling and Michael W. W. Adams, "Genome Sequence of the Anaerobic, Thermophilic and Cellulolytic Bacterium Anaerocellum thermophilum DSM 6725", Journal of Bacteriology, 2009.[pubmed]
  3. (2009) F. Mao, P. Dam, Jacky Chou, V Olman, and Ying Xu, "DOOR: a database for prokaryotic operons", Nucleic Acids Research, 2009. [pubmed] [Google Scholar] [DOOR Website]
  4. (2007) T.-H. Tsai,Wen-Chi Chou, Y.-C. Lin, Y.-S. Su, C.-L. Sung, H.-J. Dai, Irene T.-H. Yeh, W. Ku, T.-Y. Sung & W.-L. Hsu, "BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model", BMC Bioinformatics 8:35, 2007 [pubmed]
  5. (2006) T.-H. Tsai, S.-H. Wu, Wen-Chi Chou, Y.-C. Lin, D. He, T.-Y. Sung, W.-L. Hsu, "Various Criteria in the Evaluation of Biomedical Named Entity Recognition", BMC Bioinformatics 7:92, 2006 [pubmed]
  6. (2006) T.-H. Tsai, Wen-Chi Chou, S.-H. Wu, T.-Y. Sung, J. Hsiang, W.-L. Hsu. "Integrating Linguistic Knowledge into a Conditional Random Field Framework to Identify Biomedical Named Entities", Expert Systems with Applications 30 (1), 117-128, 2006 [Google Scholar]

Conference papers:

  1. Richard T.-H. Tsai, H.-J. Dai, H.-C. Hung, Ryan T.-K. Lin, Wen-Chi Chou, Y.-S. Su, M.-Y. Day, W.-L. Hsu (2007), BESearch: A Supervised Learning Approach to Search for Molecular Event Participants, in Proceedings of the IEEE International Conference on Information Reuse and Integration.
  2. Wen-Chi Chou, T.-H. Tsai, Y.-S. Su, W. Ku, T.-Y. Sung, W.-L. Hsu (2006), A Semi-Automatic Method for Annotating a Biomedical Proposition Bank, ACL Workshop on Frontiers in Linguistically Annotated Corpora 2006. [Google Scholar]
  3. T.-H. Tsai, Wen-Chi Chou, Y.-C. Lin, W. Ku, Y.-S. Su, T.-Y. Sung, W.-L. Hsu (2006), BIOSMILE: Adapting Semantic Role Labeling for Biomedical Verbs: An Exponential Model Coupled with Automatically Generated Template Features, in Proceedings of BioNLP-2006.
  4. Y.-F. Lin, T.-H. Tsai, Wen-Chi Chou, K.-P. Wu, T.-Y. Sung, W.-L. Hsu (2004), A Maximum Entropy Approach to Biomedical Named Entity Recognition, in Proceedings of 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BioKDD).
  5. Y.-F. Lin, Wen-Chi Chou, K.-P. Wu, T.-Y. Sung, W.-L. Hsu (2004), InfoMap: A Framework for Integrated Proteomic Knowledge Base, Proceedings of 3rd International Proteomics Conference (invited talk) (IPC04).
  6. W.-L. Hsu, J.-M. Chang, Wen-Chi Chou, J.-B. Chen, K.-P. Wu, T.-Y. Sung, C.-F. Chang, W.-J. Wu and T.-H. Huang (2004), An Iterative Relaxation Technique for the NMR Backbone Assignment Problem, in Proceedings of IEEE Fourth Symposium on Bioinformatics and Bioengineering (invited talk) (BIBE2004).

Posters:

  1. Yanbin Yin, Wen-Chi Chou, Ying Xu (2009), Phylogenetic sub-classification of CAZy families and application in identification of novel glycosyl hydrolases in the environmental metagenomes. BioEnergy Science Center 3rd retreat
  2. Wen-Chi Chou, M. Bar-Peled, Ying Xu (2009) Computational Prediction of Golgi Resident Proteins in Arabidopsis thaliana, Genomics:GTL Awardee Workshop VII
  3. Fenglou Mao, Fengfeng Zhou, Wen-Chi Chou, Yanbin Yin, Huiling Chen, Chan Zhou, Ying Xu (2008), pDAWG: plant Database of Annotated cell Wall Genome, BioEnergy Science Center 2nd retreat.
  4. Wen-Chi Chou, M. Bar-Peled, Ying Xu (2009) Computational Prediction of Golgi Resident Proteins in Arabidopsis thaliana, BioEnergy Science Center 2nd retreat.
  5. Wen-Chi Chou, P. Dam, M. Bar-Peled, Ying Xu (2008), Prediction of Golgi Proteins Based on Structural Domains and Functional Domains, 3rd Annual Computational and Systems Biology Symposium.

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Last update: Nov. 17, 2009

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[Contact Information] | [Research Interests] | [Education] | [Professional Experience] | [Publications] |  [Courses] | [Links] | [top]