Qin Ma, Ph.D.
Assistant Professor

Bioinformatics and Mathematical Biosciences Lab
Department of Plant Science
South Dakota State University
100 Administration Lane, Brookings, SD, 57006
Phone: (706)254-4293
Email: maqin2001@gmail.com

Research Gate

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CONFERENCE POSTERS

  1. Bingqiang Liu, Guojun Li, Ying Xu, Qin Ma, Development of Computational Tools in DNA motif identification and analyses, RECOMB/ISCB Conference on Regulatory and Systems Genomics, Nov. 15-18, Philadelphia, 2015.
  2. Qin Ma, Wen-Chi Chou, Shihui Yang, Sha Cao, Dawn M. Klingeman, Steven D. Brown, Ying Xu, Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum, BioEnergy Science Center, Chattanooga, TN, 2015.
  3. Xin Chen, Qin Ma, Xizeng Mao, Yuhong Tang, Xiaolan Rao, Richard A. Dixon and Ying Xu, Genome-scale identification of cell-Wall related genes in Switchgrass through comparative genomics and transcriptomic analyses, BioEnergy Science Center, Chattanooga, TN, 2015.
  4. Xin Chen, Xiaolan Rao, Qin Ma, Hui Shen, Yu Shang, Richard Dixon and Ying Xu, Co-expression analysis of lignin biosynthetic genes for gene regulatory networks in Rice, Switchgrass and Arabidopsis, BioEnergy Science Center, Chattanooga, TN, 2015.
  5. Xin Chen, Qin Ma, Yuhong Tang, Xizeng Mao, and Ying Xu, A de novo RNA-seq analysis pipeline for Switchgrass integrating the reconstruction of transcriptional regulatory network, BioEnergy Science Center, Chattanooga, TN, 2015.
  6. Gaoyang Li, Qin Ma, Haodi Feng and Ying Xu, A novel framework for identifying all the elementary flux modes in a genome-scale metabolic network, BioEnergy Science Center, Chattanooga, TN, 2015.
  7. Qin Ma, Xin Chen, and Ying Xu, An integrated computational suite of web-servers and tools developed by CSBL, BioEnergy Science Center, Chattanooga, TN, 2015.
  8. Xin Chen, Qin Ma, Yuhong Tang, Ying Xu, Whole genome Computational Analyses of Transcriptomic Data Reveal cell-wall synthesis related genes in switchgrass, BioEnergy Science Center, Chattanooga, TN, 2014
  9. Xin Chen, Qin Ma, Yuhong Tang, Xizeng Mao, Ying Xu, Expression level Quality check for RNA-SEQ mapping and multiple hit reads reassignment, BioEnergy Science Center, Chattanooga, TN, 2014
  10. Qin Ma, Hanyuan Zhang, Xizeng Mao, Ying Xu, A integrated web server for DNA motif indentification and analysis, BioEnergy Science Center, Chattanooga, TN, 2014
  11. Qin Ma, Xizeng Mao, Xin Chen, Ying Xu, Inference of reliable genome-scale bacterial metabolic network, BioEnergy Science Center, Chattanooga, TN, 2014
  12. Qin Ma, Computational Analyses of Transcriptomic Data Reveal the Dynamic Organization of the E. coli Chromosome under Different Conditions, Genome Biology and Bioinformatics, Atlanta, GA, 2013
  13. Xizeng Mao, Mirko Basen, Xin Chen, Qin Ma, Zheng Ruan, Amanda Rhaesa, Michael Adams and Ying Xu, Reconstruction of a usable whole-genome metabolic network for Caldicellulosiruptor bescii DSM 6725, BioEnergy Science Center, Chattanooga, TN, 2013.
  14. Xizeng Mao, Qin Ma, Chuan Zhou, Xin Chen, Hanyuan Zhang, Wei Lai and Ying Xu, DOOR 2.0: an Integrated View of Operons for Prokaryotes, BioEnergy Science Center, Chattanooga, TN, 2013.
  15. Qin Ma, Chuan Zhou, Xizeng Mao, Yanbin Yin, Ying Xu, Insights into biofuel production by comparative genomic analysis of clostridium genomes, BioEnergy Science Center, Chattanooga, TN, 2013.
  16. Xin Chen, Qin Ma, Shan Wang, Xizeng Mao, Rick Dixon and Ying Xu, Biclustering Analyses of Transcriptomic Data Reveal the cell-wall synthesis related genes in Panicum virgatum, BioEnergy Science Center, Chattanooga, TN, 2013.
  17. Chi Zhang, Qin Ma, Xizeng Mao, Xin Chen and Ying Xu, Prediction of transcriptional regulatory logic in Clostridium thermocellum ATCC 27405, BioEnergy Science Center, Chattanooga, TN, 2013.
  18. Wen-Chi Chou, Qin Ma, Shihui Yang, Xizeng Mao, Xin Chen, Sha Cao, Steven D. Brown, Ying Xu, SeqTU: Identification of bacterial transcription units using strand-specific RNA-seq data at a genome scale, Institute of Bioinformatics State-of-the-Art Next Generation Sequence Symposium, Athens, GA, 2013 (award).
  19. Qin Ma, Yanbin Yin, Chuan Zhou, Ying Xu, Insights into biofuel production by comparative genomic analysis of clostridium genomes, BioEnergy Science Center, Chattanooga, TN, 2012.
  20. Bingqiang Liu, Phuongan Dam, Guojun Li, Qin Ma, Victor Olman, Fenglou Mao, Jacky Chou, Ying Xu, Reconstruction of the transcriptional regulatory network in prokaryotes, BioEnergy Science Center retreat, Asheville, NC, USA, 2010.