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Web interface

The server version of our motif finding algorithm can be accessed here.


Software availability

  • BoBro - motif finding

  • BBS - motif scanning

  • BBC - motif comparing (blast)



  • Disclaimer: We just release the executable program of BoBro now. We will release the original code after our further testing.
    Documentation: Read online for a quick start, PDF version will come soon...


    Benchmark

    The motif-comparing algorithm is tested in several scenarios, including:

    The motif-scanning algorithm is tested in several scenarios, including:

    The motif-finding algorithm is tested in several scenarios, including:

    Test data availability



    Press above button to get the test data set.

    FAQ

    A detailed explanation for why we need such an algorithm, as well as some precautions for possible mis-uses.


    Contact

    Bugs, problems, suggestions can be dumped to
    Qin Ma: maqin@csbl.bmb.uga.edu
    Bingqiang Liu: bingqiang@csbl.bmb.uga.edu


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    Page last updated: Jul. 14, 2009