Insertion Sequence Annotation (ISA) System - Browser

Insertion Sequences show diverse recent activities in Cyanobacteria and Archaea.
Fengfeng Zhou, Victor Olman and Ying Xu.
BMC Genomics 2008, 9:36.


 


Anabaena_variabilis_ATCC_29413
     
 

Distribution of recently active Insertion Sequence elements (raIS) and A+T contents (window size: 1,000 bp) of each chromosomes and plasmids:

raIS elements annotated with different colors based on the IS families and groups they belong to. The information could be found details .
1 A+T contents ranging in [0%, 100%]
2 Positions of annotated raIS
3 A+T content of the chromosome or plasmid
 


   NC_007413 Click to view the full size in a separate window.
   NC_007410 Click to view the full size in a separate window.
   NC_007411 Click to view the full size in a separate window.
   NC_007412 Click to view the full size in a separate window.

List of recently active Insertion Sequence Annotations for Anabaena_variabilis_ATCC_29413

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ID RefSeq ID Region Annotation Copy no Terminal Inverted Repeats Covering genes
0 NC_007413 3082234-3083132 (-) IS5Sa 10 details 75908700, 75908701, (all)
1 NC_007413 1782648-1783546 (+) IS5Sa 10 details 75907662, 75907663, (all)
2 NC_007410 86811-87710 (+) IS5Sa 10 details 75812357, (all)
3 NC_007412 221956-223504 (+) ISGka4 9 details 75812845, (all)
4 NC_007410 320825-322371 (+) ISGka4 9 details 75812581, (all)
5 NC_007410 281624-283170 (+) ISGka4 9 details 75812532, (all)
6 NC_007410 139802-141348 (+) ISGka4 9 details 75812406, (all)
7 NC_007413 5719237-5720783 (+) ISGka4 9 details 75910762, (all)
8 NC_007413 5140139-5141685 (+) ISGka4 9 details 75910324, (all)
9 NC_007413 1702724-1704270 (-) ISGka4 9 details 75907604, (all)
10 NC_007413 3692987-3694535 (+) ISGka4 9 details 75909186, (all)
11 NC_007413 2590796-2592342 (+) ISGka4 9 details 75908319, (all)
12 NC_007413 172129-173361 (-) ISC1048 13 details 75906354, (all)
13 NC_007413 595719-596888 (-) ISC1048 13 No TIRs detected. 75906695, (all)
14 NC_007413 3961815-3963053 (-) ISC1048 13 details 75909396, (all)
15 NC_007413 1982986-1984155 (+) ISC1048 13 No TIRs detected. 75907827, (all)
16 NC_007413 1485858-1487027 (+) ISC1048 13 No TIRs detected. 75907428, (all)
17 NC_007413 1442033-1443202 (+) ISC1048 13 No TIRs detected. 75907396, (all)
18 NC_007413 5769476-5770645 (-) ISC1048 13 No TIRs detected. 75910809, (all)
19 NC_007413 2697761-2698930 (-) ISC1048 13 No TIRs detected. 75908400, (all)
20 NC_007413 3156726-3157895 (-) ISC1048 13 No TIRs detected. 75908770, (all)
21 NC_007410 50626-52234 (-) ISC1048 13 details 75812322, (all)
22 NC_007410 249239-250408 (+) ISC1048 13 No TIRs detected. 75812503, (all)
23 NC_007410 174103-175272 (-) ISC1048 13 No TIRs detected. 75812439, (all)
24 NC_007410 283813-285441 (-) ISC1048 13 details 75812535, (all)
25 NC_007413 1680414-1681312 (-) ISMac15 10 details 75907586, 75907587, (all)
26 NC_007413 4141140-4142038 (+) ISMac15 10 details 75909523, 75909524, (all)
27 NC_007413 1228891-1229789 (+) ISMac15 10 details 75907241, 75907242, (all)
28 NC_007413 981565-982463 (+) ISMac15 10 details 75907023, 75907024, (all)
29 NC_007413 4735332-4736230 (+) ISMac15 10 details 75910004, 75910005, (all)
30 NC_007413 3269123-3270021 (+) ISMac15 10 details 75908854, 75908855, (all)
31 NC_007412 107761-108659 (-) ISMac15 10 details 75812740, 75812741, (all)
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Disclaimer:
The dataset and this website is freely available to academic users. Commercial users should contact the
CSBL lab.

Website created by Fengfeng Zhou 2007

Last updated: Oct-26-2007.