cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data
Fengfeng Zhou, Ying Xu
Bioinformatics, 2010 26(16):2051-2052.

Prerequisition
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cBar needs the following softwares:

Download
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cBar version 1.2: http://csbl.bmb.uga.edu/~ffzhou/cBar/cBar.1.2.tar.gz

Installation
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Use this command to compile the c codes in your system:

make


Usage
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You may use this command to process the example genome sequence of Synechococcus elongatus PCC 7942.

> ./cBar.pl Synechococcus_elongatus_PCC_7942.fna Synechococcus_elongatus_PCC_7942.cBar.txt
Formatting the sequences ... [FormattedSeq:2] [done]
Generating the K-mer profiles ... [KMer] [Profile] [done]
Predicting ... [Predicted] [Saved] [Cleared] [done]


Last update: August 20, 2010