- F. Mao, Y. Yin, F. Zhou, W. Chou, C. Zhou, H. Chen and
Y. Xu, "pDAWG: an Integrated Database for Plant Cell-Wall Genes",
BioEnergy Research, 2009, in press.
- F. Mao, P. Dam, J. Chou, V Olman, and Y. Xu, "DOOR:
a database for praokaryotic operons", Nucleic Acids Research
vol 37(1), D459 - 463, 2009.
- V. Olman, F. Mao, H Wu, Y. Xu, Parallel Clustering Algorithm
for Large Data Sets with applications in Bioinformatics, IEEE/ACM
Transactions on Computational Biology and Bioinformatics,
vol6(2), 344-352, 2009.
- F. Mao, H. Wu, P. Dam, IC. Chou, E. Voit, and Y. Xu,
Biological Pathway and Network Construction, Chapter 12 of the
book "Computational Methods for Understanding
Archaeal and Bacterial Genomes", Imperial College Press,
2008.
- P. Dam, F. Mao, P. Wan, T. Tran, D. Che, G. Li and Y.
Xu, Computational elucidation of operons/uber-operon, Chapter
10 of the book "Computational Methods for Understanding Archaeal and
Bacterial Genomes", Imperial College Press, 2008.
- H. Wu, F. Mao, V. Olman, Y. Xu, "An Algorithm for
Hierarchical Classification of Prokaryotic Genes," International
Symposium on Bioinformatics Research and Applications (ISBRA07),
551-563, Atlanta, GA, 2007.
- H. Wu, F. Mao, V Olman, Y. Xu, Hierarchical Classification
of Functionally Equivalent Genes in Prokaryotes, Nucleic Acids
Research, 35(7):2125-2140, 2007
Contributed equally.
- D. Che, G Li, F. Mao, H. Wu, and Y. Xu, "Detecting
uber-operons in microbial genomes", Nucleic Acids Research,
34(8), 2418 - 2427, 2006.
Contributed equally.
- Z. Su, F. Mao, P Dam, H. Wu, V. Olman, I Paulsen, B.
Palenik and Y. Xu, Computational inference and experimental validation of
nitrogen assimilation regulatory networks in cyanobacterium Synechococcus
sp. WH8102, Nucleic Acids Research 34(3), 1050
- 1065, 2006.
- F. Mao, Z. Su, V. Olman, P. Dam, Z. Liu, Y. Xu, "Mapping
of orthologous genes in the context of biological pathways: an application
of integer programming", Proc Natl Acad Sci USA,
103 (1): 129-134, 2006.
- H. Wu, F. Mao, Z. Su, V Olman, Y. Xu, Prediction of functional
modules based on gene distributions in microbial genomes, Genome
Informatics, vol 16, pp. 247 - 259, 2005.
- H. Wu, F. Mao, V. Olman, Y. Xu, Accurate Prediction of
Orthologous Gene Groups in Microbes, Proceedings of Computational
Systems Bioinformatics, 72-79, 2005.
Contributed equally.
- Z. Su, F. Mao, V. Olman and Y. Xu, Comparative genomics
analyses of ntcA regulons in cyanobacteria: regulation of nitrogen assimilation
and its coupling to photosynthesis, Nucleic Acids Research,
2005, 33:16, 5156-5171.
- H. Wu, Z. Su, F. Mao, V Olman, Y. Xu, "Prediction
of functional modules through comparative genome analysis and application
of gene ontology", Nucleic Acids Research,
2005, 33:9, 2822-2837.
- Z. Liu, F. Mao, J Guo, B Yan, Y. Xu, "Quantitative
Validation of Protein-DNA Interaction using an Optimized Knowledge-based
Potential", Nucleic Acids Research. Vol.
32:2, pp546-558, 2005.
- B. Yan, Y. Qu, F. Mao, V Olman, Y. Xu, PRIME: A Mass
Spectrum Data Mining Tool for De Novo Sequencing and PTMs Identification,
Journal of Computer Science and Technology (by
invitation) 20(4); 483 - 490, 2005.
- L. Jiang, Y. Gao, F. Mao, Z. Liu, L. Lai, Potential
of mean force for protein-protein interaction studies. Proteins.
2002 Feb 1;46(2):190-196
- F. Mao, L. Lai, Molsee: a Tcl/tk Based Program to Control
Rasmol. Journal of Applied Crystallography. 2000,
Volume 33, Part 6, 1445--1446.
- Z. Liu, F. Mao, W. Li, Y. Han and L. Lai. Calculation
of protein surface loops using Monte-Carlo simulated annealing simulation.
Journal of Molecular Modeling, Vol. 6, 1-8, 2000
- W. Liu, F. Mao, L. Lai, Y. Han. Protein Fold Recognition
Based on Structural Classification. Acta. Biophysico Sinica
(Chinese), Vol.15, No.1, 126-136, 1999
- W. Li, R. Wang, D. Lin, F. Mao, Y. Han and L. Lai. Progress
of Bioinformatics Database Services. Prog. Biochem. Biophys
(Chinese book)
- W. Li, R. Wang, Y. Han, D. Lin, F. Mao and L. Lai. Bioinformatics
Server of Peking University Computers and Applied Chemistry
(Chinese). 1997 supplement 171-172
- F. Mao, D. Lin, L. Lai. Some Problems in Hierarchical
Based Protein Structure Prediction Methods. Computers and Applied
Chemistry (Chinese). 1997 supplement 183-184
