Bingqiang Liu

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Contact Information

School of Mathematics
Shandong University
Jinan Shandong 250100
P. R. China
Office: B835 Zhixin building
Tel: (86)-531-883-63455
E-mail: bingqiang at sdu dot edu dot cn

Research Interests

• Bioinformatics.
  1. Transcriptional regulation: Motif finding and Regulon prediction.
  2. Post-Transcriptional regulation: Alternative RNA splicing.
  3. Analysis of micro array data: Bi-clustering.
  4. Bio-energy research: Cellulosome related regulatory network and Cell wall related genes.
  5. Genome rearrangement.
• Graph Theory and Application.
• Algorithm Design and Computing Complexity.

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Education

• Sep.1999 - Jul.2003: Bachelor degree in Mathematics, School of Mathematics, Shandong University.
• Sep.2003 - Jul.2006: Master degree in Operations Research, School of Mathematics, Shandong University.
• Sep.2006 - Jul.2010: Ph.D in Bioinformatics, School of Mathematics, Shandong University.
• Jan.2007 - Jan.2010: Visiting student, in Computational Systems Biology laboratory (CSBL), University of Georgia.
• Sep.2010 - Present: Lecturer, School of Mathematics, Shandong University.

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Personal Activities

• Member, 5th International Conference on Computational Systems Biology (ISB 2011), Zhuhai, Sep.2011
• Member, 4th International Conference on Computational Systems Biology (ISB 2010), SuZhou, Sep.2010
• Member, 7th International Conference on Genome Biology and Bioinformatics, Georgia Institute of Technology, Atlanta, USA, Nov. 2009.
• Member, 3rd BioEnergy Science Center retreat, Asheville NC, USA, Jun, 2009.
• Member, 3rd Annual Computational and Systems Biology Symposium, University of Georgia, Athens GA, Mar. 2008.
• Member, 2nd Annual Computational and Systems Biology Symposium, University of Georgia, Athens GA, Mar. 2007.
• Member, The Countrywide Random Graph and Network Workshop. Chinese Academy of Sciences, Beijing, China, Aug, 2005.
• Volunteer, 70th Anniversary of CMS. Shandong University, Weihai ,China. Jul. 2005.
• Reviewer, 5th International Bioinformatics Workshop (IBW 2007), Weihai, Shandong, China, Jun. 2007.
• Reviewer, Proceedings of International Symposium on Bioinformatics Research and Applications (ISBRA2008), Georgia State University, Atlanta, GA, May 2008.

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Publication

Paper published: (* indicates co-first author)
1. Guojun. Li*, Bingqiang Liu*, Qin Ma, Ying Xu, A New Framework for Identifying cis Regulatory Motifs in Prokaryotes, Nucleic Acids Researchh, Vol. 39, No. 7, e42, 2011.( sci, IF 7.8)
2. Guojun. Li*, Bingqiang Liu*, Ying Xu, Accurate Recognition of cis Regulatory Motifs with the Correct Lengths in Prokaryotic Genomes, Nucleic Acids Research, Vol. 38, No. 2, e12, 2010. (sci, IF 7.8)
3. Guojun Li, Qin Ma, Bingqiang Liu, Haibao Tang, Andrew H. Paterson, Ying Xu, A Close-to Optimum Bi-clustering Algorithm for Microarray Gene Expression Data. CSB 2009, Stanford.
4. Xingqin Qi, Guojun Li, Jichang Wu, Bingqiang Liu. Sorting signed permutations by fixed-length reversals. International Journal of Functions of Computer Science. Vol.17, No.4, 2006, Page 993-948. (sci, IF 0.554)
   Paper submitted and completed:
5. Bingqiang Liu, Phuongan Dam, Guojun Li, Ying Xu, Identification of TFBSs at genome scale in prokaryotes using a new phylogenetic footprinting framework, Completed, 2010.
   Paper in prepare:
6. Bingqiang Liu*, Wen Zhou*, Guojun Li, Ying X, Identification of cis-regulatory elements in prokaryotes through an integrative approach, in prepare, 2010.
7. Guoqing Wang, Bingqiang Liu, Fengfeng Zhou, Ying Xu, Fan Li, Identification of genomic islands in Synechococcus sp. WH8102 using genomic barcode and whole-genome microarray analyses, in prepare, 2010.
   Poster:
8. Bingqiang Liu, Phuongan Dam, Guojun Li, Qin Ma, Victor Olman, Fenglou Mao, Jacky Chou, Ying Xu, Reconstruction of the transcriptional regulatory network in prokaryotes, BioEnergy Science Center 3rd retreat, Asheville NC, USA, 2009.
9. Wen Zhou, Bingqiang Liu, Ying Xu, An Integrative Pipeline for Detecting Bacterial Regulation Networks and Its Application to C. Thermocellum Cellulosome Production, BioEnergy Science Center 3rd retreat, Asheville NC, USA, 2009.
10. Phuongan Dam, Fenglou Mao, Victor Olman, Fengfeng Zhou, Wen Zhou, Jinling Huang, Chan Zhou, Wen-Chi Chou, Bingqiang Liu, Yanbin Yin, and Ying Xu, High-Resolution Functional Assignments of Genes Related to Plant Cell Wall Biosynthesis, BioEnergy Science Center 2nd retreat, Chattanooga TN, USA, 2008.
11. Guojun Li, Bingqiang Liu, Ying Xu, A Statistical Method for Motif-Finding without Knowing their Lengths, CSBS2008, Athens GA.

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Hobbies

• SOCCER: Playing soccer game is my first-line hobby. And I am fan of LunengTaishan.
• MUSIC: I enjoy classic music. As for pop, I do not like the noisy ones, but smooth old songs always moved me.
• READING: Masterpiece and History. My favorite is "The Dream of Red Mansion".

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