| "Motif Length Could Be Computationally Recognized" | |
Speaker: Dr. Guojun Li |
| "Dynamic analysis of biological networks" | |
Speaker: Dr. Ruoyu Luo |
| "Beyond Sequence Alignment : An optimization framework for the inference of nontrivial protein domain architecture and ancient homology" | |
Speaker: Dr. Degui Zhi |
| "Plant Phylogenomics: Comparative Analyses of Plant Genes and Genomes" | |
Speaker: Dr. Jim Leebens-Mack |
| "Artificial Neural Networks and Prediction of Protein Structural Properties" | |
Speaker: Dr. Bin Xue |
| "Enzyme Prediction based on Protein Subfamily and Support Vector Machine" | |
Speaker: Dr. Ying Huang |
| "DA and Xiao - Two Giant and Composite LTR-retrotransposon-like Structures Identified in the Human Genome" | |
Speaker: Dr. Shaying Zhao |
| "Decipher lysophospholipid signaling in embryo implantation" | |
Speaker: Dr. Xiaoqin Ye |
| "An Introduction to Monte Carlo Methods: A New Paradigm in Scientific Exploration (Part III and End)" | |
Speaker: Dr. David Landau |
| "An Introduction to Monte Carlo Methods: A New Paradigm in Scientific Exploration (Part II)" | |
Speaker: Dr. David Landau |
| "An Introduction to Monte Carlo Methods: A New Paradigm in Scientific Exploration (Part I)" | |
Speaker: Dr. David Landau |
| "Overview of Plant Cell Wall Polysaccharide Biosynthesis: Are We Ready for a Systems Biology Approach?" | |
Speaker: Dr. Debra Mohnen |
| "Computational Methods for Automatic Parallelization of Workflow Problems and Applications to Genome Scale Protein Structure Prediction" | |
Speaker: Dr. Kyle Ellrott |
| "Marginal hazards regression for case-control and case-cohort studies with possibly correlated failure time data" | |
Speaker: Dr. Sangwook Kang |
| "Molecular Epidemiology of Viral Hepatitis" | |
Speaker: Dr. Yuri Khudyakov |
| "Evolution of a genetic regulatory network" | |
Speaker: Dr. Sue Brown |
| "Evolutional pathways of H5N1 Avian Influenza Virus" | |
Speaker: Dr. Xiu-Feng (Henry) Wan |
| "Polynomial Spline Smoothing for Nonlinear Time Series" | |
Speaker: Dr. Lily Wang |
| "Identification of network involved in Nucleotide-sugar metabolic pathways and regulation" | |
Speaker: Dr. Maor Bar-Peled |
| "On the origin of microbial ORFans: are they from viruses?" | |
Speaker: Dr. Yanbin Yin |
| "Interpreting and Misinterpreting Shared Introns in Homologous Genes : Tubulin Case" | |
Speaker: Dr. Vivek Gopalanz |
| "Detection of genomic duplication pattern and divergence profiles of paralogous genes in rice" | |
Speaker: Dr. Xiyin Wang |
| "M-TASSER: An Algorithm for Protein Quaternary Structure Prediction" | |
Speaker: Dr. Huiling Chen |
| "Molecular engineering of microbes for useful products" | |
Speaker: Dr. Rachel Chen |
| "A Tale of Two Projects with Metabolically Engineered Escherichia coli" | |
Speaker: Dr. Mark A. Eiteman |
| "Nonnegative Matrix Factorization for Data Analysis" | |
Speaker: Dr. Haesun Park |
| "Some research issues in Genomic Signal Processing" | |
Speaker: Dr. Yufei Xiao (postdoc candidate) |
| "The number of prokaryotes on earth (and why we care)" | |
Speaker: Dr. Barny Whitman |
| "Single Molecule Wires: Molecular Nanoelectronics and Biosensors" | |
Speaker: Dr. Bingqian Xu |
| "A Computational Approach for Identification of Drug Targets using Metabolic Network" | |
Speaker: Dr. Tamer Kahveci |
| "Discrete Algorithms for Disease Association Search and Susceptibility Prediction" | |
Speaker: Dr. Alexander Zelikovsky |
| "An Overview of Blind Source Separation" | |
Speaker: Dr. Xiaoli Ma |
| "Membrane Protein Structure Prediction : A Necessarily Multi-disciplinary Task" | |
Speaker: Dr. Claire Gervais |
| "A brief review of mathematical tools in system engineering: hybrid filtering, stochastic approximation, and multi-time scale structure" | |
Speaker: Dr. Qing Zhang |
| "Ecological Genomics in the Coastal Ocean" | |
Speaker: Dr. Mary Ann Moran |
| "What positions nucleosomes: An incomplete history of the discovery of the nucleosome positioning code" | |
Speaker: Dr. Jan Mrazek |
| "Combining Comparative Genomics with de novo Motif Discovery to Identify Human Transcription Factor DNA-Binding Motifs" | |
Speaker: Dr. Linyong Mao (CSBL postdoc candidate) |
| "Hypothalamus - Pituitary - Adrenal (HPA) Axis Modeling" | |
Speaker: Eric Aslakson |
| "Information theory based DNA binding site models" | |
Speaker: Dr. Zehua Chen (CSBL postdoc candidate) |
| "Glucocorticoid Receptor: A Disturbing Element in the HPA Axis Negative Feedback Loop in stress-related diseases" | |
Speaker: Dr. Shakti Gupta(CSBL postdoc candidate) |
| "Study of the kinetics of realtime PCR by ensemble ethod" | |
Speaker: Mr. Wenduo Zhou(CSBL postdoc candidate) |
| "Molecular Modeling: a Diversified Tool for Understanding Molecular Crystals" | |
Speaker: Dr. Claire Gervais(CSBL postdoc candidate) |
| "Analysis of Protein Structure Using Delaunay Tessellation" | |
Speaker: Dr. Todd Taylor (CSBL postdoc candidate) |
| "Prospects and Challenges in Proteomics" | |
Speaker: Dr. Junmin Peng |
| "A new clustering method -- quasi-clique merger" | |
Speaker: Dr. Yongbin Ou |
| "Genome-scale maps of recently active IS elements in cyanobacteria and archaea" | |
Speaker: Dr. Fengfeng Zhou |
| "Site Mapping and Characterization---How Unsatisfying for Complex Glycans!" | |
Speaker: Dr. Lance Wells |
| "Detecting Uber-operons in Prokaryotic Genomes" | |
Speaker: Dr. Fenglou Mao |
| "Protein secondary structure prediction" | |
Speaker: Dr. Wen-Lian Hsu |
| "Preserving Privacy and Confidentiality of Healthcare Data" | |
Speaker: Dr. Li Xiong |
| "Dissecting the effects of nitroheterocyclic compounds on environmentally relevant species using genomics" | |
Speaker: Dr. Edward Perkins |
| "Genomics-enabled Biogeochemistry in Nevada Hot springs" | |
Speaker: Dr. Chuanlun Zhang |
| "Applications of Statistics in Drug Discovery and Engineering" | |
Speaker: Dr. Abhyuday Mandal |
| "Challenges and benefits of metagenome sequence analysis" | |
Speaker: Dr. Margie D. Lee |
| "A hierarchical system of homologous genes for prokaryotes" | |
Speaker: Dr. Hongwei Wu |
| "Introduction to the Floating Genome (aka Open Source Evolution)" | |
Speaker: Dr. Anne Summers |
| "CREAD: Comprehensive Regulatory Element Analysis and Detection" | |
Speaker: Dr. Andrew Smith |
| "Mitotic orchestration: molecular dissection of chromosome segregation" | |
Speaker: Dr. Xuebiao Yao |
| "Linking evolutionary genome instability to colorectal tumorigenesis:comparing the human, dog, and mouse genomes" | |
Speaker: Dr. Shaying Zhao |
| "Effective Use of Data Mining Technologies on Biological and Clinical Data" | |
Speaker: Dr. Huiqing Liu |
| "The Approximability of the Exemplar Breakpoint Distance Problem" | |
Speaker: Dr. Binhai Zhu |
| "Clinical and comparative aspects of canine prostate cancer" | |
Speaker: Dr. Bruce LeRoy |
| "Comparative Genomics of Gossypium and Arabidopsis: Unraveling the Consequences of both Ancient and Recent Polyploidy" | |
Speaker: Dr. Junkang Rong |
| "Computational predictions of cis-regulatory elements with high accuracy in prokaryotes" | |
Speaker: Dr. Zhengchang Su |
| "The regulation of the C. elegans cell cycle by cullin ubiquitin ligases" | |
Speaker: Dr. Edward Kipreos |
| "Digital Representations of Complex Carbohydrate Structures: Implications for Automated Analysis of High-Throughput Spectral Data" | |
Speaker: Dr. William S. York |
| "The road to predicting non-coding RNA genes" | |
Speaker: Thao Tran |
| "Modeling Carbohydrate Antibody Interactions" | |
Speaker: Dr. Robert J. Woods |
| "Modeling of Nanoscale molecular devices and biological macromolecules" | |
Speaker: Dr. Xiange Zheng (postdoc candidate) |
| "Network Cluster Analysis via a Continuous Evolution of a Physical Analog" | |
Speaker: Dr. Vladimir Gudkov |
| "A MAGIC Approach to Gene Discovery and Transcriptome Expression" | |
Speaker: Dr. Lee H. Pratt |
| "Computational modeling of transmembrane helix packing at different length scales" | |
Speaker: Dr. Zhong Chen |
| "Mathematical Models for Predicting Chemical Induced Disturbances in the Thyroid" | |
Speaker: Jeffrey W. Fisher, Ph.D. |
| "Detecting Differential Expression for Microarray Time Course Data" | |
Speaker:Ming Yuan, Ph.D. |
| "Random Walks through the Gene Machine: the Ensemble Method of Biological Circuit Identification" | |
Speaker:Dr. Bernd Schuttler |
| "Parallel Computing: Introduction and Application" | |
Speaker:Professor Thiab Taha |
| "Sample classification using microarray data: Dealing with potential misclassification" | |
Speaker:Dr. Romdhane Rekaya |
| "Intragenomic Conflict and Evolution of Gene Silencing" | |
Speaker:Dr. Paul Schliekelman |
| "Genetic Design of Drugs without Side-effects" | |
Speaker:Dr. Guojun Li, Visiting Scientist |
| "Pathway Mapping with Operon & Regulon Information: An Integer Programming Method" | |
Speaker:Dr. Fenglou Mao |
| "Comparative analyses of bacterial phosphonate metabolic pathway" | |
Speaker:Dr. Jinling Huang |
| "Computational prediction of operons in Synechococcus sp. WH8102" | |
Speaker:Dr. Xin Chen |
| "Protein Structure Recognition: From codability principle to structural threading method" | |
Speaker:Dr. Haibo Cao, postdoctoral candidate |
| "Towards Computational Inference of Regulatory Pathways in Prokaryotes" | |
Speaker:Dr. Zhengchang Su |
| "Identification of ion types in Tandem Mass Spectra - a novel graph-theoretic approach" | |
Speaker:Dr. Bo Yan |
| "Understanding and Detecting Hidden Periodic features in Data: An Introduction to Fourier Analysis" | |
Speaker:Vincent A. Emanuele II |
| "Discriminant analysis and predictive models in bioinformatics" | |
Speaker:Eva K. Lee, Ph.D. |
| "Graphical CMOS IDDQ Testing Signatures Based on Data Mining" | |
Speaker:Dr. Lan Rao |
| "Improving Power Efficiency for Wireless Transmissions" | |
Speaker:Professor Tong Zhou |
| "Physical Design of DNA Probe Arrays" | |
Speaker:Dr. Alex Zelikovsky |
| "New Mathematical Analysis of Fetal Heart Rate" | |
Speaker:Ms. Hanqing Cao |
| "Modeling prosody for speech recognition" | |
Speaker:Mr. Ken Chen |
| " Acoustic feature based classification of ground vehicles" | |
Speaker: Ms. Hongwei Wu |
| "Optimal construction of theoretical spectrum, and defining the area of peptide identification problems, for which the intensity model is not necessary" | |
Speaker: Dr. Tema Fridman |
| "Entropy, pattern matching, and sequence analysis" | |
Speaker: Dr. Lihua Song |
| "Molecular Simulations of Complicated Polymeric Systems: Algorithms and Applications" | |
Speaker: Dr. Zhong Chen |
| "Methods and models for gene regulation" | |
Speaker: Dr.Sohyoung Kim |
| "RDC-PROSPECT: Protein structure prediction using residual dipolar coupling data" | |
Speaker: Dr. Youxing Qu |
| "Protein binding sites prediction using CUBIC" | |
Speaker: Dr. Victor Olman |
| "Micro/Nano-Structured Terrain for Controlling Cellular Activities" | |
Speaker: Dr. Guigen Zhang |
| "Protein Threading by Linear Programming" | |
Speaker: Dr. Won Jae "Dave" Chung |
| "Structural mining: Self-consistent design on flexible protein-peptide docking and transferable binding affinity potential" | |
Speaker: Dr. Zhijie Liu |
| "Transcriptional Regulatory Networks: Genome-Wide Prediction and Discovery" | |
Speaker: Drs. Bob Scott, Mike Adams, Ying Xu |
| "Transposable elements in the era of genomic: a case study in rice" | |
Speaker: Dr. Ning Jiang |
| "Functional Genomics of the Hyperthermophilic and Anaerobic Archaeon, Pyrococcus furiosus: The Response to a Blast of Cold Air" | |
Speaker: Dr. Mike Adams |
| "A New Approach to Monte Carlo Simulations in Statistical Physics" | |
Speaker: Dr. David Landau |
| "A Progress Report: Using Cubic to identify binding sites of transcriptional regulators in Synechococcus sp. WH8102" | |
Speaker: Dr. Phuongan An Dam |
| "Piecing together the significance of alternative splicing in cancer" | |
Speaker: Dr.Chindo Hicks |
| "Serial Analysis of Gene Expression (SAGE) Studies of Loblolly Pine and Arabidopsis" | |
Speaker: Dr. Jeffrey Dean |
| "Computational Predictions of Gene Functions and Biological Pathways in Arabidopsis" | |
Speaker: Dr. Dong Xu |
| "Protein Mass-Spectrometry Data Under Statistical Microscope: Probabilistic Profile Method and Its Applications" | |
Speaker: Dr. Andrey A. Gorin |
| "Stochastic grammar modeling of RNA pseudoknots" | |
Speaker: Dr. Liming Cai |
| "Predicting CpG island methylation in human tumors" | |
Speaker: Dr. Alex Feltus |
| "A computer algorithm for identification of ion types in mass spectrometry data" | |
Speaker: Dr.Ying Xu |
| "An Efficient Bayesian Network Method for Detecting Stable Gene Regulatory Networks" | |
Speaker: Dr. Hanchuan Peng |
| "New Paradigms in Cancer Research: From Molecular Pathway to Bioinformatics" | |
Speaker: Dr. Peng Wang |
| "SOAP and Web Service Design with applications to the Protein Structure Prediction Pipeline" | |
Speaker: Kyle Ellrott |