Resolve pathway mapping problem with Operon and
Regulon information by Integer Programming
Please cite this paper if you use PMAP II for your publication:
- F. Mao, Z. Su, V. Olman, P. Dam, Z. Liu, Ying Xu, "Mapping of orthologous genes in the context of biological pathways: an application of integer programming", Proc Natl Acad Sci USA, 103 (1): 129-134, 2006.
Go to the PMAP II online server, click here
COIN library should be put in the LD_LIBRARY_PATH in order to run pmap_reg.
Download COIN here
or the package
Config file description
There is a sample config file in the package, be careful to use full path to make sure pmap_reg can find those files.
Please ignore those comment lines because PMAP II is in active development.