SEAS: a System for SEED-based Pathway Enrichment Analysis

What is it?

SEAS is a computational tool for pathway enrichment analysis over a given set of genes in a specified organism against pathways (or subsystems) in the SEED database, a popular pathway database for bacteria. SEAS maps a given set of genes in a bacterium to genes currently covered by SEED through gene ID and/or orthology mapping, and then calculates the statistical significance of the enrichment of each relevant SEED pathway by the mapped genes.

Download

Binary File

seas-bin.zip

Third Party

seas-ia32-win32-thirdparty.zip

seas-universal-macosx-thridparty.zip

seas-x64-linux-thirdparty.zip

seas-x64-win64-thirdparty.zip

Test data

seas-test-data.zip

Source file

seas-src-1.0.tar.gz

Installation

Please see the file called INSTALL.txt.

Licensing

Please see the file called LICENSE.txt.

Bug Reporting

You can send GNU make bug reports to xizeng@csbl.bmb.uga.edu.