Phuongan Dam

Phuongan Dam A110 Life Science Building Department of Biochemistry and Molecular Biology University of Georgia Athens, GA 30602 Phone: 706-542-9752 Fax: 706-542-9751 E-Mail: phd@csbl.bmb.uga.edu
Position:	Research Associate Oak Ridge National Lab Computational Systems Biology Laboratory Department of Biochemistry and Molecular biology University of Georgia, Athens
Education:	Ph.D. Cellular and Molecular Biology, University of Wisconsin-Madison, 2002 B.S. Biochemistry, California State University, Fullerton, 1996
Research Interest:	Bioinformatics and Computational Biology: Modeling of Signal Transduction Pathways Protein Structure Prediction
Publications:

P. Dam, V Olman, K. Harris, Z. Su, Ying Xu, Operon prediction using both genome-specific and general genome information, Nucleic Acids Research, 35:288 - 298, 2007.
T.T. Tran, P. Dam, H. Wu, Z. Su, F. Poole, M Adams, G.T. Zhou, and Ying Xu, "Operon prediction in Pyrococcus furiosus", Nucleic Acids Research , 35:69 - 78, 2007.
F. Mao, Z. Su, V. Olman, P. Dam, Z. Liu, Ying Xu, "Mapping of orthologous genes in the context of biological pathways: an application of integer programming", Proc Natl Acad Sci USA, 103 (1): 129-134, 2006.
Z. Su, P. Dam, F. Mao, V. Olman, I. Paulsen, B. Palenik and Ying Xu, Computational inference and experimental validation of nitrogen assimilation regulatory networks in cyanobacterium Synechococcus sp. WH8102, Nucleic Acids Research 34(3), 1050 - 1065, 2006.
P. Dam, Z. Su, V Olman, Ying Xu, In silico construction of the carbon fixation pathway in Synechococcus sp. WH8102, Journal of Biological Systems, vol. 12, pp.97-125, 2004.
X. Chen, Z. Su, P. Dam, B. Palenik, Ying Xu, and T. Jiang, Operon prediction by comparative genomics: an application to the Synechococcus WH8102 genome, Nucleic Acids Research, Vol32 (7), 2147 - 2157, 2004.
Z. Su, P. Dam, X. Chen, V Olman, T. Jiang, B. Palenik, and Ying Xu, Computational Inference of Regulatory Pathways in Microbes: an application to the construction of phosphorus assimilation pathways in Synechococcus WH8102, Genome Informatics vol 10, pp. 3 - 13, Universal Academy Publishing, 2003.
D. Xu, P. Dam, D. Kim, M. Shah, E. Uberbacher, and Ying Xu, Characterization of Protein Structrue and Function at Genome-scale using a Computational Prediction Pipeline, Genetic Engineering: Principles and Methods , Vol 32, pp 269 - 293, Plenum Press, 2003.
Filla, M.S., Dam, P., and Rapraeger, A.C. The Cell Surface Proteoglycan Syndecan-1 Mediates Fibroblast Growth Factor-2 Binding and Activity. Journal of Cellular Physiology 174:310-321, 1998.
Kim, YN., Dam, P. and Bertics, P.J. EGF Receptor Overexpression is Associated with Enhanced Caveolin-1 Tyrosine Phosphorylation in Human Squamous and Epidermoid Carcinoma Cells. Exeperimental Cell Research 280(1):134-147, 2002.

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Program Committee Member for the 2007 IEEE 7th International Symposium on BioInformatics & BioEngineering (BIBE 2007) .
Reviewer

CSB2005, CSB2006, CSB2007, JBCB , AIIM, IBW2007

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